
A creamy, tangy delight awaits with these mini key lime cheesecakes made lighter with Greek yogurt. The perfect balance between tart and sweet, these individual servings bring all the flavors of a classic cheesecake with a refreshing citrus twist.
I stumbled upon this recipe during a kitchen renovation years ago. Despite the chaos of cabinet painting, these little cheesecakes became an instant household favorite. My husband devoured one in a single bite, which told me everything I needed to know about their deliciousness.
Ingredients
- Graham crackers – Process these into fine crumbs for the perfect crust foundation. Choose gluten-free or grain-free options if needed; Simple Mills makes wonderful crunchy cookies that work beautifully.
- Butter – The essential binding agent that transforms those crumbs into a proper crust with the perfect texture.
- Cream cheese – The star of any cheesecake, providing that signature tangy creaminess. Both light and full-fat varieties work wonderfully depending on your preference.
- Greek yogurt – Adds protein while keeping the texture smooth. Choose at least 2% fat content to avoid excessive tanginess. For an extra flavor boost, seek out key lime flavored Greek yogurt.
- Sugar – Just enough to balance the tartness of the lime and tanginess of the dairy. Many have successfully substituted Swerve or similar sweeteners for a keto-friendly version.
- Eggs – Provides structure and that characteristic silky cheesecake texture we all crave.
- Limes – Fresh juice and zest deliver that signature key lime flavor. Regular limes work perfectly if key limes aren't available.
Step-by-Step Instructions
- Prepare the crust –
- Process graham crackers until they reach a fine, flour-like consistency, then mix with melted butter until evenly moistened. The mixture should hold together when pressed between your fingers but shouldn't be overly greasy.
- Form the base –
- Divide the graham mixture evenly among paper-lined muffin cups, pressing firmly with the back of a measuring spoon to create a compact base. This foundation needs to be solid to support the creamy filling.
- Pre-bake the crusts –
- A quick 5-minute pre-bake sets the crust and prevents sogginess. The edges should just barely start to turn golden, giving off a warm, toasty aroma that fills the kitchen.
- Beat cream cheese –
- In a stand mixer or with hand beaters, whip the cream cheese until completely smooth with no lumps whatsoever. Take your time with this step - scrape the bowl thoroughly to ensure perfection.
- Add remaining ingredients –
- Incorporate the yogurt, sugar, and lime juice and zest, mixing until just combined. The filling should look silky and smooth with tiny specks of green zest throughout.
- Add eggs carefully –
- Mix in the eggs on medium-low speed just until incorporated. Overmixing at this stage can incorporate too much air and lead to cracks or sinking middles.
- Fill the liners –
- Pour the creamy mixture into your prepared crusts, filling each about two-thirds full. The filling will rise slightly during baking but won't overflow if measured properly.
- Bake gently –
- Bake just until the edges are set but the centers still have a slight jiggle, similar to gelatin. Resist the urge to bake longer - they'll continue to set as they cool.
- Chill thoroughly –
- Allow to cool completely at room temperature before refrigerating for at least 2 hours. Patience here is rewarded with the perfect texture.

The transformation that happens during chilling is magical. What seemed like barely-set centers become perfectly creamy, sliceable cheesecake bites that hold their shape beautifully when served.
I've always appreciated desserts that incorporate citrus. The brightness of lime cuts through the richness of the cheesecake, creating a balanced treat that doesn't feel heavy. My grandmother swore by adding citrus to dairy desserts, claiming it brought out the creaminess while adding a special dimension of flavor that plain vanilla could never achieve.
The Key to Texture Success
The secret to achieving that perfect cheesecake texture lies in temperature control. Room temperature ingredients blend more smoothly than cold ones, eliminating those frustrating cream cheese lumps that plague many homemade cheesecakes. I learned this lesson the hard way after several batches with tiny white specks throughout.
A Versatile Base Recipe
What makes these mini cheesecakes truly special is their adaptability. While key lime delivers a tropical twist, the base recipe works beautifully with lemon, orange, or even a splash of vanilla extract if citrus isn't your preference. I've experimented with various flavor combinations during family gatherings, and the lemon-blueberry variation earned particular praise from even my pickiest relatives.
Finding Balance in Lightened Desserts
The addition of Greek yogurt provides more than just nutritional benefits – it creates a unique texture that's somehow both lighter and creamier than traditional cheesecake. The slight tanginess complements the lime perfectly, creating a more complex flavor profile than you'd get from cream cheese alone.
After years of baking cheesecakes, I've discovered that the difference between good and exceptional often comes down to patience. Don't rush the chilling process. A full overnight rest in the refrigerator allows the flavors to meld and the texture to develop that signature silky smoothness that makes cheesecake so irresistible. These mini key lime versions have become my go-to for gatherings, offering a perfectly portioned ending to any meal without overwhelming guests who may have already indulged in several courses.
Frequently Asked Questions
- → Can I make these mini cheesecakes ahead of time?
- Yes! These can be made a day in advance and chilled overnight in the refrigerator. Perfect for prepping before parties or gatherings.
- → Are these mini cheesecakes gluten-free?
- They can be made gluten-free by using gluten-free graham crackers for the crust. All other ingredients are naturally gluten-free.
- → Can I use bottled lime juice instead of fresh?
- Fresh lime juice gives the best flavor, but in a pinch, you can substitute with bottled lime juice. Just make sure to still add some lime zest for that fresh citrus punch.
- → How long do these cheesecakes stay fresh?
- These mini cheesecakes will keep for up to 4 days in the refrigerator if stored in an airtight container.
- → Can I freeze these mini cheesecakes?
- Yes! These freeze well for up to 2 months. Just thaw in the refrigerator overnight before serving.